Chinese Herbal Plant Genome Database

Transcriptomes

Species	Family	Genus	Sequencing platform
Chamaemelum nobile	Asteraceae	Chamaemelum	Illumina HiSeq 4000
Chrysanthemum indicum	Asteraceae	Chrysanthemum	Illumina HiSeq 2000
Chrysanthemum morifolium	Asteraceae	Chrysanthemum	Illumina Hiseq 2000
Chrysanthemum morifolium	Asteraceae	Chrysanthemum	PacBio Sequel, Illumina HiSeq 2000
Chrysanthemum morifolium	Asteraceae	Chrysanthemum	Illumina HiSeq4000
Cirsium japonicum var. spinossimum	Asteraceae	Cirsium	Illumina Hiseq2500
Matricaria recutita	Asteraceae	Matricaria	Illumina HiSeq 4000
Saussurea lappa	Asteraceae	Saussurea	Illumina Hiseq 2000
Stevia rebaudiana	Asteraceae	Stevia	Illumina GAIIx
Aloe vera	Asphodelaceae	Aloe	Illumina HiSeq X ten, NovaSeq 6000
Aloe vera	Asphodelaceae	Aloe	Illumina HiSeq
Hemerocallis citrina	Asphodelaceae	Hemerocallis	Illumina Hiseq 2500
Polygonatum kingianum	Asparagaceae	Polygonatum	Illumina Hiseq 2000
Gymnema sylvestre	Asclepiadaceae	Gymnema	Illumina HiSeq 2500
Gymnema sylvestre	Asclepiadaceae	Gymnema	Illumina Hiseq 2500

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Ardisia crenata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.protein.fa

Ardisia japonica

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.protein.fa

Ardisia pusilla

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.protein.fa

Ardisia quinquegona

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.protein.fa

Balanophora involucrata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.protein.fa

Bergenia purpurascens

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Centranthera grandiflora

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Coptis teeta

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.protein.fa

Curculigo orchioides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.protein.fa

Cyclocarya paliurus

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.pep.fas

Desmodium concinnum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.protein.fa

Dipsacus asperoides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.protein.fa

Erigeron breviscapus

hormone:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLength.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.pep.fasta

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.protein.fa

Fibraurea recisa

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.protein.fa

Gelsemium elegans

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.protein.fa

Gentiana rigescens

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.protein.fa

Flower:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.protein.fa

Gynostemma longipes

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/GlUnigene.blast.protein.fa

Gynostemma pentaphyllum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene-JDA.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.protein.fa

Hemsleya chinensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.protein.fa

Marsdenia tenacissima

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.protein.fa

Neoalsomitra integrifoliola

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.pep.fas

Panax notoginseng

L:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.protein.fa

Panax vietnamensis

Root:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.pep.fas

Paris polyphylla var. yunnanensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/mRNA.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.pep.fasta