Species: Aloe vera
Accession Number
PRJNA359629
Sample
Sample Location: in the herbal nursery at Guru Jambheshwar University of Science and Technology, Hisar, India.
Sample Part: root and leaf
Sequencing
Sequencing platform: Illumina HiSeq
Sequencing data: 51,078,070 (14,868,243,650 bp) and 29,247,010 (5,907,896,020 bp) reads of root and leaf, respectively.
Assembly and Annotation
Assembly software: Trinity
Assembly result: 1, 61,733 and 2, 21,792 assembled transcripts for root and leaf with a mean length of 709 and 714 nucleotides for root and leaf respectively, and 1,13,063 unigenes for root and 1,41,310 unigenes for leaf have been identified with an average length of 743 bp and 640 bp for root and leaf respectively.
Annotation Method: Nr, KEGG, GO
Data Url
Reference
Choudhri P, Rani M, Sangwan R S, et al. De novo sequencing, assembly and characterisation of Aloe vera transcriptome and analysis of expression profiles of genes related to saponin and anthraquinone metabolism[J]. BMC genomics, 2018, 19(1): 427.
