Chinese Herbal Plant Genome Database

Transcriptomes

Species	Family	Genus	Sequencing platform
Panax vietnamensis	Araliaceae	Panax	BGI T7
Curculigo orchioides	Amaryllidaceae	Curculigo	Illumina Hiseq 4000
Desmodium concinnum	Fabaceae	Desmodium	Illumina Hiseq 4000

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Ardisia crenata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.protein.fa

Ardisia japonica

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.protein.fa

Ardisia pusilla

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.protein.fa

Ardisia quinquegona

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.protein.fa

Balanophora involucrata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.protein.fa

Bergenia purpurascens

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Centranthera grandiflora

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Coptis teeta

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.protein.fa

Curculigo orchioides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.protein.fa

Cyclocarya paliurus

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.pep.fas

Desmodium concinnum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.protein.fa

Dipsacus asperoides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.protein.fa

Erigeron breviscapus

hormone:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLength.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.pep.fasta

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.protein.fa

Fibraurea recisa

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.protein.fa

Gelsemium elegans

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.protein.fa

Gentiana rigescens

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.protein.fa

Flower:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.protein.fa

Gynostemma longipes

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/GlUnigene.blast.protein.fa

Gynostemma pentaphyllum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene-JDA.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.protein.fa

Hemsleya chinensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.protein.fa

Marsdenia tenacissima

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.protein.fa

Neoalsomitra integrifoliola

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.pep.fas

Panax notoginseng

L:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.protein.fa

Panax vietnamensis

Root:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.pep.fas

Paris polyphylla var. yunnanensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/mRNA.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.pep.fasta