Species: Taxus yunnanensis
Accession Number
SRP127697
Sample
Sample Location: cultivar Zd2 (established by vegetative propagation) were grown in the fields of Songkou town Meizhou, Guangdong China (40° 01 N’ 116° 16’ E)
Sample Part: needle, branch and root
Sequencing
Sequencing platform: Illumina HiSeq 2000
Sequencing data: 30,048,566, 31,282,310 and 31,513,946 raw reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: a total of 24,229,442, 23,662,085 and 23,369,760 reads were mapped in the root, branch, and needle respectively. Among the mapped reads, 17,925,541, 16,998,853 and 17,028,029 could be uniquely mapped to the assembled transcriptome while 6,303,899, 6,663,232 and 6,341,731 were mapped to multiple positions on reference transcriptome in the root, branch, and needle respectively.
Annotation Method: NR, KEGG, Swiss-Prot, GO, COG
Data Url
Reference
Mubeen S , Li Z L , Huang Q M , et al. Comparative Transcriptome Analysis Revealed the Tissue-Specific Accumulations of Taxanes among Three Experimental Lines of Taxus yunnanensis[J]. Journal of Agricultural and Food Chemistry, 2018, 66(40): 10410-10420.
