Species: Zingiber striolatum
Sample
Sample Location: in an experimental field at the Zunyi Academy of Agricultural Sciences in Xinzhou (town), Xinpu (district), Zunyi (city), China.
Sample Part: root, stem, leaf, flower and fruit
Sequencing
Sequencing platform: Illumina HiSeq 2000
Sequencing data: 146,199,712 raw reads, 13,008,709 clean reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: 287,959 contigs with an average length of 1,029 bp, an N50 of 1,684 bp, and 112,107 unigenes with an average length of 28,891 bp, an N50 of 3,356 bp.
Annotation Method: NR, Swiss-Prot, KEGG, RNAmmer, eggNOG, Uniprot, COG
Reference
Deng K , Deng R , Fan J , et al. Transcriptome analysis and development of simple sequence repeat (SSR) markers in Zingiber striolatum Diels[J]. Physiology & Molecular Biology of Plants, 2018, 24(1):125-134
Reference url