Species: Asarum sieboldii
Accession Number
CRR127990
Sample
Sample Location: collected from LaoShan mountain (Qingdao, Shandong province) in April 2019.
Sample Part: leaves, stems, roots
Sequencing
Sequencing platform: PacBio Sequel II, Illumina HiSeq 2500
Sequencing data: Pacbio: total of 348,913 circular consensus sequences (22.1 G), with an average length of 1,258 bp. Illumina: total of 223,260,305 clean read.
Assembly and Annotation
Assembly software: SMRT Analysis, Proovread software,
Assembly result: 63,023 transcriptional sequences, with an average length of 1,371 bp, N50 length of 1,813 bp.
Annotation Method: NR, NT, Swissprot, GO, COG, KOG, Pfam, KEGG
Data Url
Reference
Chen C, Shi X, Zhou T, Li W, Li S, Bai G. Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii. Genome. 2020 Dec 15.
