Species: Aucklandia costus
Accession Number
SUB5375309
Sample
Sample Location: The plant samples were obtained from Kullu, HP, India (31.9579° N,77.1095° E). These plants were maintained in plant tissue culture facilityof the Department of Biotechnology, Panjab University, Chandigarh(30.7333° N, 76.7794° E).
Sample Part: leaves, roots
Sequencing
Sequencing platform: Illumina HiSeq 2500
Sequencing data: 153,000,000 raw reads, 123,000,000 clean reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: 388,941 transcripts, 162,539 unigenes. The length of transcripts were >200 bp and mean GC content of 39.36%.
Annotation Method: NR, Pfam, InterPro, GO, KEGG
Reference
Vasundhara Thakur,Savita Bains,Shivalika Pathania,Shailesh Sharma,Ravneet Kaur,Kashmir Singh. Comparative transcriptomics reveals candidate transcription factors involved in costunolide biosynthesis in medicinal plant- Saussurea lappa[J]. International Journal of Biological Macromolecules,2020,150.
Reference url