Description
Nelumbo nucifera has been cultivated for thousands of years in Asia for its edible rhizomes, seeds and leaves. This plant has also been used as herbal medicine for the treatment of cancer, depression, diarrhea, heart problems and insomnia.
- SUMMARY
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Published journals
The Plant Journal
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Publish date
2018.03
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Sequence Method
Illumina HiSeq, 454
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Assembly
ASM303368v1
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Assembly Method
AllPaths v. 40102; ALLMAPS v. June-2017
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Genome Size
817.268 Mb
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Genome Coverage
100x
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Scaffolds
2341
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Contigs
53811
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N50
44440
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GC%
39.1575
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Bioproject
PRJNA397484
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GCA Number
GCA_003033685.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/033/685/GCA_003033685.1_ASM303368v1/
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Reference url
Reference
Gui, S., Peng, J., Wang, X., Wu, Z., Cao, R., Salse, J., Zhang, H., Zhu, Z., Xia, Q., Quan, Z., Shu, L., Ke, W., & Ding, Y. (2018). Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements. The Plant journal : for cell and molecular biology, 94(4), 721–734.
- SUMMARY
-
Published journals
The Plant Journal
-
Publish date
2018.03
-
Sequence Method
Illumina HiSeq
-
Assembly
ASM303369v1
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Assembly Method
SOAPdenovo v. 2.01; ALLMAPS v. June-2017
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Genome Size
799.479 Mb
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Genome Coverage
90x
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Scaffolds
12643
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Contigs
52196
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N50
39837
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GC%
39.1226
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Bioproject
PRJNA397371
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GCA Number
GCA_003033695.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/033/695/GCA_003033695.1_ASM303369v1/
-
Reference url
Reference
Gui, S., Peng, J., Wang, X., Wu, Z., Cao, R., Salse, J., Zhang, H., Zhu, Z., Xia, Q., Quan, Z., Shu, L., Ke, W., & Ding, Y. (2018). Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements. The Plant journal : for cell and molecular biology, 94(4), 721–734.
- SUMMARY
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Published journals
Molecular biology and evolution
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Publish date
2020.04
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Sequence Method
Illumina, PacBio, Hi-C
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Assembly
ASM1431973v1
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Assembly Method
SparseAssembler v. 09-2016; DBG2OLC v. 06-2016; LACHESIS v. 03-2013; Jelly v. 01-2017
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Genome Size
821.286 Mb
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Genome Coverage
129.2x
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Scaffolds
464
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Contigs
3274
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N50
872679
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GC%
38.972
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Bioproject
PRJNA481856
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GCA Number
GCA_014319735.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/319/735/GCA_014319735.1_ASM1431973v1/
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Reference url
Reference
Shi, T., Rahmani, R. S., Gugger, P. F., Wang, M., Li, H., Zhang, Y., Li, Z., Wang, Q., Van de Peer, Y., Marchal, K., & Chen, J. (2020). Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants. Molecular biology and evolution, 37(8), 2394–2413.